Marinka Zitnik

Fusing bits and DNA

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@University of Toronto, Terrence Donnelly Centre for Cellular and Biomolecular Research (Part III)

So what have I been up to in recent weeks here at Toronto? Highlights include my first ride with famous American yellow school bus to a reception at ICSB12 conference, some sightseeing in Toronto city and a trip to Niagara Falls.

Besides, I have finished with data analysis of real-time yeast S. cerevisiae microscopy screens, an idea about it can be captured here. I am now starting with time series analysis and will probably have time to work on integration of phenomics data with genetic interaction and protein interaction data.

Recently a quantum optics research group here at UofT demonstrated a violation of Heisenberg's uncertainty principle and I was really excited about their work. "The quantum world is still full of uncertainty, but at least our attempts to look at it don't have to add as much uncertainty as we used to think!" ... and an easy reading to motivate you to learn more.

I have also come upon a nice real-world (I do not like this term) implementation of an argument based machine learning offered through classification module in CellProfiler Analyst package, participated in a discussion about Gaussian processes (intro, notes) at ccbr-stats meeting and much more. The Lab organized a farewell lunch for summer students only two weeks after my arrival to Toronto, as here and in US classes have already begun (after the Labour Day), I considered it as a welcome event :)

Below are images of Toronto CN Tower, Niagara Falls as seen from Skylon Tower and squirrels at UofT campus (Yes, one cannot miss numerous squirrels playing in parks at campus. A careful look should reveal four of them.), respectively.