Marinka Zitnik

Fusing bits and DNA

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@University of Toronto, The 13th International Conference on Systems Biology (Part II)

The 13th international conference on systems biology was held in Toronto, 19th--23rd August 2012. Here is a list of talks from platform sessions which I found especially interesting:

  • Modeling the regulatory diversity of human cancers (S. Nelander)
  • Tissue specific modeling of functional genomics data: from networks to understanding human disease (O. Troyanskaya)
  • An evaluation of methods for the modeling of transcription factor sequence specificity (M. T. Weirauch)
  • SEEK and find: data management for systems biology projects (O. Krebs)
  • Excerbt: next-generation knowledge extraction and hypothesis generation from massive amounts of biomedical literature (B. Wachinger)
  • Combining multiple biological domains using patient network fusion (B. Wang)
  • Combining many interaction networks to predict gene function and analyze gene lists (Q. Morris)
  • Assembling global maps of cellular function through integrative analysis of physical and genetic networks (R. K. Srivas)
  • iCAVE: immersive 3d visualization of biomolecular interaction network (Z. Gumus)
  • Systems-level insights from the global yeast genetic interaction network (C. Myers)
  • Monopoly systems edition: advance to GO collect $200 (T. Idekar) (*actually about NeXO, a network extracted ontology and functional enrichment)
  • Genome-scale metabolic models: a bridge between bioinformatics and systems biology (J. Nielsen)

The organizers came up with a nice social program, parts of it is depicted on images below. At opening ceremony Tanja Tagaq, an Inuit woman, performed a unique style of traditional throat singing, Amanda and Rasmus from Sweden made performance at first poster session, Serena Ryder entertained us at conference reception dinner. Shonen Knife, a Japanese punk band that opened Nirvana, played at second poster session at Hart House.

I attended workshops on Designing experiments using state of the art Bayesian global parameter search methodology (M. Goldstein), Introduction to the statistical inference or regulatory networks (F. Emmert-Streib), Imaging flow cytometry: a new view on systems biology (R. DeMarco). In addition to parallel sessions I also enjoyed special lectures and plenary sessions. A few of them are: Reading and writing omes (G. Church), Towards unification of genetic and hierarchy models of tumor heterogeneity (J. Dick), Interactome networks and human disease (M. Vidal), The genetics of individuals (B. Lehner), Synthetic genetic interaction analysis by high-throughput imaging to map cellular networks, Unraveling principles of gene regulation using thousands of designed promotor sequences (E. Segal), Systems biology applications of imaging flow cytometry (T. Galitski).