Marinka Zitnik

Fusing bits and DNA

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Data Mining

Article: Submit to AIME 2017 Workshop on Advanced Healthcare Analytics

You are cordially invited to submit a paper to the Workshop on Advanced Predictive Models in Healthcare that will take place during the AIME 2017 conference. This workshop will focus on topics related to advanced predictive models, capable of ...

Article: Submit to ECML PKDD 2017

You are cordially invited to submit a paper to the upcoming 2017 ECML PKDD conference. ECML PKDD is the European Conference on Machine Learning and Knowledge Discovery. It is the largest European conference in these areas that has developed from the...

Article: ACM XRDS: The Infinite Mixtures of Food Products

The Fall issue of ACM XRDS is here! In this issue of XRDS, we take a closer look at the marriage of physics and computer science through quantum computing. Quantum computing is a model of computation that breaks with the tradition of digital computers...

Article: ACM XRDS: The Brownian Wanderlust of Things

The Spring issue of ACM XRDS is here! This issue is centered around digital fabrication, which in many ways highlights the expanded role of computer in today's society. Digital fabrication is not merely about 3D printing knickknacks, rather it enables...

Article: ACM XRDS: Activities of Daily Living in the Era of Internet of Things

The Winter issue of ACM XRDS is here! This issue discusses Internet of Things (IoT), a collection of emerging technologies that promise to seamlessly expand our sensing capabilities across the globe with imagination as our only limit. In the issue you...

Article: PSB 2016: Collective Pairwise Classification for Multi-Way Analysis

Our paper on Collective Pairwise Classification for Multi-Way Analysis has been published in the Proceedings of the 21st Pacific Symposium on Biocomputing. We will present the work at the PSB conference in January 2016. In the paper, we develop a...

Article: ACM XRDS: The Marvel Comic Book Universe

The Fall issue of ACM XRDS is here! In this issue we write about virtual reality. Among others, you can read about the virtual reality revolution and ways to bring virtual reality home. The issue also discusses how to use your own muscles to achieve...

Article: Data Fusion Tutorial at the IEEE Engineering in Medicine and Biology

Together with Blaz Zupan we organize a tutorial on data fusion at the International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC). In the tutorial, we will explore latent factor models, a popular class of approaches that ...

Article: ACM XRDS: Understanding Cancer with Matrix Factorization

The Summer issue of ACM XRDS is here! In this issue we write about computational biology. Our features and interviews present different perspectives about some of the most recent advances of computational biology. You can read about personalized...

Article: ISMB 2015: Integrate Everything but the Kitchen Sink

Our poster at ISMB 2015 is concerned with data set selection and sensitivity estimation in collective factor models. Molecular biology data is rich in volume as well as heterogeneity. We can view individual data sets as relations between objects of...

Article: ACM XRDS: Dynamics of News from The New York Times

New issue of ACM XRDS is here! The focus of this issue is on techniques for natural language processing in the broader sense. You will find interesting stories about how to detect influencers in social media discussions, how to successfully transition...

Article: @RECOMB 2014, Pittsburgh, PA (Part I)

We got accepted a paper on Imputation of Quantitative Genetic Interactions in Epistatic MAPs by Interaction Propagation Matrix Completion to RECOMB 2014. Epistatic Miniarray Profile (E-MAP) is a popular large-scale gene interaction discovery...

Article: @University of Toronto, Terrence Donnelly Centre for Cellular and Biomolecular Research (Part III)

So what have I been up to in recent weeks here at Toronto? Highlights include my first ride with famous American yellow school bus to a reception at ICSB12 conference, some sightseeing in Toronto city and a trip to Niagara Falls. Besides, I have...

Article: @University of Toronto, The 13th International Conference on Systems Biology (Part II)

The 13th international conference on systems biology was held in Toronto, 19th--23rd August 2012. Here is a list of talks from platform sessions which I found especially interesting: Modeling the regulatory diversity of human cancers (S....

Article: @University of Toronto, Terrence Donnelly Centre for Cellular and Biomolecular Research (Part I)

In the past few days I have settled in Toronto, Canada, where I will stay until October this year. As a graduate student I will be working at the University of Toronto, Terrence Donnelly Centre for Cellular and Biomolecular Research in the Charlie...