Marinka Zitnik

Fusing bits and DNA

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Neural Embeddings

Article: Bioinformatics: What side effects to expect if taking multiple drugs?

Many patients take multiple drugs at the same time to treat complex diseases, such as heart failure, or co-occurring diseases, such as diabetes and epilepsy. The use of combinations of drugs is a common practice. In fact, 25 percent of people ages 65...

Article: Tutorial on Representation Learning for Network Biology

I am excited to announce that our tutorial on Representation learning for network biology is accepted at ISMB 2018. I will present the tutorial at ISMB 2018 conference in Chicago, IL. Stay tuned for more information and tutorial materials. Networks...

Article: Graph Convolutional Networks for Computational Pharmacology

Our paper on graph convolutional networks for modeling polypharmacy side effects has been accepted to ISMB conference. Stay tuned for the final version published in Bioinformatics journal. We describe a general graph convolutional neural network...

Article: ISMB/ECCB 2017: Feature Learning in Multi-layer Tissue Networks

I am giving a talk on feature learning in multi-layer tissue networks and tissue-specific protein function prediction at ISMB/ECCB. Check out the slides, the poster and the recorded talk.

Article: Understanding Protein Functions in Different Biological Contexts

Our paper on predicting multicellular function through multi-layer tissue networks is published in Bioinformatics and is included in the proceedings of ISMB/ECCB 2017, a premier conference in bioinformatics and computational biology. Understanding...

Article: Invited Talk on Uncovering Cellular Functions Through Multi-Layer Tissue Networks

I'm giving an invited talk on discovering gene functions through multi-layer tissue networks at the Network Medicine meeting at NetSci 2017. Check out the slides.